Avise J C. 2000. Phylogeography: the history and formation of species. Cambridge, Massachusetts: Harvard University Press.
Bittkau C and H P Comes. 2008. Molecular inference of a Late Pleistocene diversification shift in Nigella s. lat. (Ranunculaceae) resulting from increased speciation in the Aegean archipelago. Journal of Biogeography, 36: 1346-1360.
Carstens B C and C L Richards. 2007. Integrating coalescent and ecological niche modeling in comparative phylogeography. Evolution, 61: 1439-1454.
Chan L M, J L Brown, A D Yoder. 2011. Integrating statistical genetic and geospatial methods brings new power to phylogeography. Molecular Phylogenetics and Evolution, 59: 523-537.
Chen SY, Wu G L, Zhang D J, et al. 2008. Potential refugium on the Qinghai-Tibet Plateau revealed by the chloroplast DNA phylogeography of the alpine species Metagentiana striata (Gentianaceae). Biological Journal of the Linnean Society, 157: 125-140.
Chou Y W, P I Thomas, Ge X J, et al. 2011. Refugia and phylogeography of Taiwania in East Asia. Journal of Biogeography, 38: 1992-2005.
Cun Y Z and Wang X Q. 2010. Plant recolonization in the Himalaya from the southeastern Qinghai-Tibetan Plateau: Geographical isolation contributed to high population differentiation. Molecular Phylogenetics and Evolution, 56: 972-982.
Excoffier L, G Laval, S Schneider. 2005. Arlequin (version 3.0): An integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online, 1: 47.
Gao J, Wang B S, Mao J F, et al. 2012. Demography and speciation history of the homoploid hybrid pine Pinus densata on the Tibetan Plateau. Molecular Ecology, 21:4811-4827.
Gao L M, M Möller, Zhang X M, et al. 2007. High variation and strong phylogeographic pattern among cpDNA haplotypes in Taxus wallichiana (Taxaceae) in China and North Vietnam. Molecular Ecology, 16: 4684-4698.
Gong W, Chen C, C Dobeš, et al. 2008. Phylogeography of a living fossil: Pleistocene glaciations forced Ginkgo biloba L. (Ginkgoaceae) into two refuge areas in China with limited subsequent postglacial expansion. Molecular Phylogenetics and Evolution, 48: 1094-1105.
Hewitt G. 2000. The genetic legacy of the Quaternary ice ages. Nature, 405: 907-913.
Hewitt G M. 2004. Genetic consequences of climatic oscillations in the Quaternary.Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences, 359: 183-195.
Hickerson M J, B C Carstens, J Cavender-Bares, et al. 2010. Phylogeography's past, present, and future: 10 years after Avise, 2000. Molecular Phylogenetics and Evolution, 54: 291-301.
Hijmans R J, S E Cameron, J L Parra, et al. 2005. Very high resolution interpolated climate surfaces for global land areas. International Journal of Climatology, 25: 1965-1978.
Huang S, Chiang Y, B A Schaal, et al. 2001. Organelle DNA phylogeography of Cycas taitungensis, a relict species in Taiwan. Molecular Ecology, 10: 2669-2681.
Hwang S Y, Lin T P, Ma C S, et al. 2003. Postglacial population growth of Cunninghamia konishii (Cupressaceae) inferred from phylogeographical and mismatch analysis of chloroplast DNA variation. Molecular Ecology, 12: 2689-2695.
Jensen J L, A J Bohonak, S T Kelley. 2005. Isolation by distance, web service. BMC Genetics, 6: 13.
Keppel G, Van Niel KP, G W Wardell Johnson, et al. 2011. Refugia: Identifying and understanding safe havens for biodiversity under climate change. Global Ecology and Biogeography, 21: 393-404.
Kidd D M and M G Ritchie. 2006. Phylogeographic information systems: Putting the geography into phylogeography. Journal of Biogeography, 33: 1851-1865.
Kozak K H, C H Graham, J J Wiens. 2008. Integrating GIS-based environmental data into evolutionary biology. Trends in Ecology & Evolution, 23: 141-148.
Lehmkuhl F and F Haselein. 2000. Quaternary paleoenvironmental change on the Tibetan Plateau and adjacent areas (Western China and Western Mongolia). Quaternary International, 65: 121-145.
Li G D, Yue L L, Sun H, et al. 2012a. Phylogeography of Cyananthus delavayi (Campanulaceae) in Hengduan Mountains inferred from variation in nuclear and chloroplast DNA sequences. Journal of Systematics and Evolution, 50: 305-315.
Li L, R J Abbott, Liu B, et al. 2013. Pliocene intraspecific divergence and Plio-Pleistocene range expansions within Picea likiangensis (Lijiang spruce), a dominant forest tree of the Qinghai-Tibet Plateau. Molecular Ecology, 22: 5237-5255.
Li X H, Shao J W , Lu C, et al. 2012b. Chloroplast phylogeography of a temperate tree Pteroceltis tatarinowii (Ulmaceae) in China. Journal of Systematics and Evolution, 50: 325-333.
Li Y, Zhai S N, Qiu Y X, et al. 2011. Glacial survival east and west of the ‘Mekong-Salween Divide' in the Himalaya-Hengduan Mountains region as revealed by AFLPs and cpDNA sequence variation in Sinopodophyllum hexandrum (Berberidaceae). Molecular Phylogenetics and Evolution, 59: 412-424.
Manel S and G Segelbacher. 2009. Perspectives and challenges in landscape genetics. Molecular Ecology, 18: 1821-1822.
Manel S, M K Schwartz, G Luikart, et al. 2003. Landscape genetics: combining landscape ecology and population genetics. Trends in Ecology & Evolution, 18: 189-197.
Manni F, E Guerard, E Heyer. 2004. Geographic patterns of (genetic, morphologic, linguistic) variation: How barriers can be detected by using Monmonier's algorithm. Human Biology, 76: 173-190.
Meng L, Yang R, R J Abbott, et al. 2007. Mitochondrial and chloroplast phylogeography of Picea crassifolia Kom. (Pinaceae) in the Qinghai-Tibetan Plateau and adjacent highlands. Molecular Ecology, 16: 4128-4137.
Nei M and Li W. 1979. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proceedings of the National Academy of Sciences, 76: 5269-5273.
Noss R F. 1990. Indicators for monitoring biodiversity: A hierarchical approach. Conservation Biology, 4: 355-364.
Opgenoorth L, G G Vendramin, Mao K, et al. 2010. Tree endurance on the Tibetan Plateau marks the world's highest known tree line of the Last Glacial Maximum. New Phytologist, 185: 332-342.
Phillips S J, R P Anderson, R E Schapire. 2006. Maximum entropy modeling of species geographic distributions. Ecological Modelling, 190: 231-259.
Qiu Y X, Fu C X, Comes H P. 2011. Plant molecular phylogeography in China and adjacent regions: tracing the genetic imprints of Quaternary climate and environmental change in the world's most diverse temperate flora. Molecular Phylogenetics and Evolution, 59: 225-244.
Qiu Y X, Sun Y, Zhang X P, et al. 2009. Molecular phylogeography of East Asian Kirengeshoma (Hydrangeaceae) in relation to Quaternary climate change and landbridge configurations. New Phytologist, 183: 480-495.
Richards C L, B C Carstens, L L Knowles. 2007. Distribution modelling and statistical phylogeography: An integrative framework for generating and testing alternative biogeographical hypotheses. Journal of Biogeography, 34: 1833-1845.
Schönswetter P, I Stehlik, R Holderegger, et al. 2005. Molecular evidence for glacial refugia of mountain plants in the European Alps. Molecular Ecology, 14: 3547-3555.
Schorr G, N Holstein, P B Pearman, et al. 2012. Integrating species distribution models (SDMs) and phylogeography for two species of Alpine Primula. Molecular Ecology, 2:1260-1277.
Soltis D E, A B Morris, J S McLachlan, et al. 2006. Comparative phylogeography of unglaciated eastern North America. Molecular Ecology, 15: 4261-4293.
Taberlet P, L Fumagalli, A G Wust, et al. 1998. Comparative phylogeography and postglacial colonization routes in Europe. Molecular Ecology, 7: 453-464.
Tamura K and Nei M. 1993. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Molecular Biology and Evolution, 10: 512-526.
Thomassen H A, Z A Cheviron, A H Freedman, et al. 2010. Spatial modelling and landscape-level approaches for visualizing intra-specific variation. Molecular Ecology, 19: 3532-3548.
Vandergast A G, A J Bohonak, S A Hathaway, et al. 2008. Are hotspots of evolutionary potential adequately protected in southern California? Biological Conservation, 141: 1648-1664.
Vandergast A G, W M Perry, R V Lugo, et al. 2011. Genetic landscapes GIS Toolbox: tools to map patterns of genetic divergence and diversity. Molecular Ecology Resources, 11: 158-161.
Wang F Y, Gong X, Hu C M, et al. 2008. Phylogeography of an alpine species Primula secundiflora inferred from the chloroplast DNA sequence variation. Journal of Systematics and Evolution, 46: 13-22.
Wood D A, A G Vandergast, K R Barr, et al. 2012. Comparative phylogeography reveals deep lineages and regional evolutionary hotspots in the Mojave and Sonoran Deserts. Diversity and Distribution, 19: 722-737.
Wu Z Y and Wu S G. 1998. A proposal for a new floristic kingdom (realm): The E. Asiatic Kingdom, its delineation and characteristics. In: Zhang A L, Wu S G (Eds.). Proceedings of the First International Symposium of Floristic Characteristics and Diversity of East Asian Plants. Berlin/ Beijing: Springer Verlag/China Higher Education Press, 3-42.
Yu G, Chen X, Ni J, et al. 2000. Palaeovegetation of China: A pollen data-based synthesis for the mid-Holocene and last glacial maximum. Journal of Biogeography, 27: 635-664.
Yu H B and Zhang Y L. 2013. Advances in Phylogeography of alpine plants in the Tibetan Plateau and adjacent regions. Acta Botany Boreal –Occident Sinica, 33: 1268-1278. (in Chinese)
Yuan Q J, Zhang Z Y, Peng H, et al. 2008. Chloroplast phylogeography of Dipentodon (Dipentodontaceae) in southwest China and northern Vietnam. Molecular Ecology, 17: 1054-1065.
Zhang J P, Zhang Y L, Liu L S, et al. 2011a. Predicting potential distribution of Tibetan spruce (Picea smithiana) in Qomolangma (Mount Everest) National Nature Preserve using maximum entropy niche-based model. Chinese Geographical Sciences, 21: 417-426.
Zhang Q, Chiang T Y, George M, et al. 2005. Phylogeography of the Qinghai-Tibetan Plateau endemic Juniperus przewalskii (Cupressaceae) inferred from chloroplast DNA sequence variation. Molecular Ecology, 14: 3513-3524.
Zhang T C, Comes H P, Sun H. 2011b. Chloroplast phylogeography of Terminalia franchetii (Combretaceae) from the eastern Sino-Himalayan region and its correlation with historical river capture events. Molecular Phylogenetics and Evolution, 60: 1-12.